CRISPRessoCompare
CRISPRessoCompare is a utility for the comparison of a pair of CRISPResso analyses. CRISPRessoCompare produces a summary of differences between two conditions, for example a CRISPR treated and an untreated control sample (see figure below). Informative plots are generated showing the differences in editing rates and localization within the reference amplicon,
CRISPRessoCompare Inputs
To run CRISPRessoCompare you must provide:
- Two output folders generated with CRISPResso using the same reference amplicon and settings but on different datasets.
- Optionally a name for each condition to use for the plots, and the name of the output folder.
CRISPRessoCompare Parameters
CRISPRessoCompare Examples
CRISPRessoCompare‑‑name ‑‑output_folder ‑‑verbosity ‑‑min_frequency_alleles_around_cut_to_plot ‑‑zip_output ‑‑max_rows_alleles_around_cut_to_plot ‑‑suppress_report ‑‑place_report_in_output_folder ‑‑debug ‑‑crispresso_output_folder_1 ‑‑crispresso_output_folder_2 ‑‑sample_1_name ‑‑sample_2_name ‑‑reported_qvalue_cutoff ‑‑disable_guardrails ‑‑use_matplotlib