Changelog

v2.3.0 - Targeting Minato - 04/10/2024

Fix samtools piping by @Colelyman in #325
Fix for recent Matplotlib v3.8 by @mbowcut2 in #346
Fix Matplotlib breaking change issue by @mbowcut2 in #352
Fix assigning multiple qwc by @Snicker7 in #375
Fix interleaved fastq input in CRISPRessoPooled and suppress CRISPRessoWGS params by @Colelyman in #392
Fix #367, reads only align to prime edited amplicon, not to reference by @mbowcut2 in #393
Fix the assignment of multiple quantification window coordinates by @Snicker7 in #403
Fix space character in README by @DennyDai in #400
Fix Jinja2 undefined variables by @Colelyman in #417

Flash and Trimmomatic are replaced with Fastp by @trevormartinj7, @Snicker7, and @Colelyman
Failed runs are displayed with the error by @trevormartinj7
Replace link to CRISPResso schematic with raw URL in README by @Colelyman in #329
Prime editing alignment params by @kclem in #336
Run unit tests via Github Actions and fix matplotlib character issue by @Snicker7 and @mbowcut2 in #386
Remove future Pandas warnings and sort CRISPRessoCompare tables by @mbowcut2 and @Snicker7 in #389
Run integration tests on every push by @Snicker7 in #394
Move read filtering to after merging in CRISPResso by @Colelyman in #397
Decrease Docker image size and fix PE naming and parameter behavior by @Colelyman, @Snicker7 and @mbowcut2 in #404