Changelog
v2.3.0 - Targeting Minato - 04/10/2024
ADDED
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Guardrails (checking experimental conditions and raising warnings) by @Snicker7
FIXED
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Fix samtools piping by @Colelyman in #325
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Fix interleaved fastq input in CRISPRessoPooled and suppress CRISPRessoWGS params by @Colelyman in #392
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Fix #367, reads only align to prime edited amplicon, not to reference by @mbowcut2 in #393
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Fix the assignment of multiple quantification window coordinates by @Snicker7 in #403
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Fix Jinja2 undefined variables by @Colelyman in #417
CHANGED
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Flash and Trimmomatic are replaced with Fastp by @trevormartinj7, @Snicker7, and @Colelyman
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Failed runs are displayed with the error by @trevormartinj7
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Replace link to CRISPResso schematic with raw URL in README by @Colelyman in #329
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Run unit tests via Github Actions and fix matplotlib character issue by @Snicker7 and @mbowcut2 in #386
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Remove future Pandas warnings and sort CRISPRessoCompare tables by @mbowcut2 and @Snicker7 in #389
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Move read filtering to after merging in CRISPResso by @Colelyman in #397
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Decrease Docker image size and fix PE naming and parameter behavior by @Colelyman, @Snicker7 and @mbowcut2 in #404