1. 1. Parameters
2. 2. CRISPResso
3. 1. 2.1. CRISPResso Examples
   2. 2.2. CRISPResso Output
   3. 2.3. Guardrails
4. 3. CRISPRessoBatch
5. 1. 3.1. CRISPRessoBatch Examples
6. 4. CRISPRessoPooled
7. 1. 4.1. Amplicons Mode
   2. 4.2. Genome Mode
   3. 4.3. Mixed Mode
   4. 4.4. CRISPRessoPooled Examples
8. 5. CRISPRessoWGS
9. 1. 5.1. CRISPRessoWGS Examples
10. 6. CRISPRessoCompare
11. 1. 6.1. CRISPRessoCompare Examples
12. 7. CRISPRessoPooledWGSCompare
13. 1. 7.1. CRISPRessoPooledWGSCompare Examples
14. 8. CRISPRessoAggregate
15. 1. 8.1. CRISPRessoAggregate Examples
16. 9. CRISPRessoPro